Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGATPPDTVALRLAPCASAAEDPGS---------------APSGSCCSAVHAIGKQSPRCLCAVMLSNTA----R-SAG-----IKAEVAITIPKRCNLADRPVGYKCGDYTLP
1SM7 Chain:A ((14-104))
--------------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ--IGTC-------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48764 for 434 contacts (-112.4/contact) +
2D Compatibility (PS) -6672 + (NN) -1089 + (LL) 324
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -60001.0 ( -138.25 by residue)
QMean score : 0.240
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: