Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------MTLCDIDDKGLADCKPSVTQPNPVDPS-----------PDCCEALKGADLACLC-SYKNSMWLPSFGIDPMLALS----LPPKCNLQMPPNC--
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQME----EAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNL-MSQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25634 for 460 contacts (-55.7/contact) +
2D Compatibility (PS) -7358 + (NN) -6272 + (LL) 480
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -44534.0 ( -96.81 by residue)
QMean score : 0.257
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: