Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVQCGQVTQLMAPCMPYLSGA---P--GMTP-----------YGICCNSLRVLAELAATTADRVAACNCVRAAAGAGG--FPPVD-----FTRAAGLPAACGLKIN--FAISPNMDCNQVTDEP
1W2Q Chain:A ((23-121))
--------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-----N-TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV-----------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48352 for 432 contacts (-111.9/contact) +
2D Compatibility (PS) -7529 + (NN) -1337 + (LL) 1748
1D Compatibility (HY) -2000 + (ID) 450
Total energy: -57920.0 ( -134.07 by residue)
QMean score : 0.158
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: