Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------YCFLADIQPCIPAIKATGPRQAPTAACCDSISK--TSQVCLCQAVSGPE----TPRAG---LSVGKALVLPLECGINV-PSGTTCAKFFLVVFDLVFA------------
1IM3 Chain:D ((1-95))
PWFQIEDNRCYIDNGK-----LFARG-----------SIVGNMSRFVFDPKADYGGVGENLYVHADDVEFVPGESLKWNVR-NLDVMPIFET------LALRLVLQGDVIWLRCVPEL
General information:
TITO was launched using:
RESULT:
Template:
1IM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41806 for 342 contacts (-122.2/contact) +
2D Compatibility (PS) -7367 + (NN) -44 + (LL) 1344
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -52673.0 ( -154.01 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_1IM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM3-query.scw
PDB file :
Tito_Scwrl_1IM3.pdb
: