Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------ACSNNYIQLAGCLNAVSSSAGYPGSSCCTAVSHFKNDVNCLCSTLVAAKNA-----GVIRNMPN------ALTVPKRCGFKNNIPKNFRCAGYKVGS--------
1HSS Chain:A ((5-124))
MCYPGQAFQVPALPACR-PLLRLQCNGSQVPEA---VLRDCCQQLAHISEW--CRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLP--IVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39068 for 495 contacts (-78.9/contact) +
2D Compatibility (PS) -7959 + (NN) 422 + (LL) -64
1D Compatibility (HY) -4800 + (ID) 800
Total energy: -52269.0 ( -105.59 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: