Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSAAECKEETRL-AIKACKPVVYGM--------D----P-----------SPACCERARVTHVECVCPLITPKLAALI------------DVNKAVRIIEGCGRKVPRHYKCGSITTP
1PSY Chain:A ((16-116))
----QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18247 for 467 contacts (-39.1/contact) +
2D Compatibility (PS) -6531 + (NN) -362 + (LL) 560
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -26530.0 ( -56.81 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: