Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DMSPTECKEERKLAGNACRPMLYGQNPSA---NCCQRIRVTHVECICPYVSPK-VASIVRAYGLNKLIKKIEGCGRAIPHNFKCGSITTP-----
1JJU Chain:A ((274-351))
-----------------AAPQVLAVAPARLKIGEETQLRVAGTGLGSDLTLPEGVAGSVESAGNGVTVLKLTATGTPGPVSLELGGQKVDLVAYD
General information:
TITO was launched using:
RESULT:
Template:
1JJU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21619 for 439 contacts (-49.2/contact) +
2D Compatibility (PS) -7843 + (NN) -1652 + (LL) 824
1D Compatibility (HY) 1200 + (ID) 650
Total energy: -29740.0 ( -67.74 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_1JJU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJU-query.scw
PDB file :
Tito_Scwrl_1JJU.pdb
: