Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DYTRLMIQVHSYVPFCAYTYDYFSYCLDFLTGY----Y-Y----------KPGKKCCVHIVKLNIIAKHKKENPRLLCNCVEMMTRGYT-PP-M-------LADKIQQLPLLCNTHLSFPISSSMDCSTV
1SM7 Chain:A ((13-100))
--------------------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------D-QVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69636 for 424 contacts (-164.2/contact) +
2D Compatibility (PS) -6609 + (NN) -2600 + (LL) 2912
1D Compatibility (HY) -800 + (ID) 400
Total energy: -77133.0 ( -181.92 by residue)
QMean score : 0.138
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: