Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFITFEGIDGSGKTIQSELLANYFKQIHGENNMVLTREPGGTDFAEKVRGILLK-DSIDPVSELLLLISMRYEHVKKVILPALKKGKIVICDRFIDSTIAYQGYGLGVDLELIRDLHKL-VKIKYPDTTFILDIDVQIGLSR---AMDKNKYEEMNISFYNKVRKGFQEIAINEPDRCSIITEIEAKDNNQVHVEIVNKVTATKPVLLRK
4QGH Chain:B ((4-177))
-FITFEGPEGSGKTT---VINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIK-----RLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI-----
General information:
TITO was launched using:
RESULT:
Template:
4QGH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81328 for 1218 contacts (-66.8/contact) +
2D Compatibility (PS) -18356 + (NN) -15081 + (LL) 1152
1D Compatibility (HY) -13200 + (ID) 3300
Total energy: -130113.0 ( -106.83 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_4QGH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QGH-query.scw
PDB file :
Tito_Scwrl_4QGH.pdb
: