Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNFFQKLTGKFCNFFTFKGLFASDIAIDLGTANTLVYQKNQG-IVLDEPSVVARIKEK------GSYIPYAFGKKAKMMLGKTPGEIEAIRPLKDGVIADFKSAEEMLKYFIRSANTKLTVNKPNIIICVPSGSTPVERRAIQDAA-ESAGANEVFLIEEPMAAAIGAGLPV---TEPEGSMVVDIGGGTTEVAIISLGGIVYS--RSARVGGDIMDEAIRSYIRENHKL---LIGETTAEKIKKSLGSASLPDENNKEW---------MMVKGRDLVSGMPKEMLLSEYQV---AESLIEP------VHQIISAIKTALESTPPELSSDIVDKGIVLSGGGGLLRNLGKVISETTKLPV--------------------HVADDPLCCVALGSGKVLENMDYFSHVLFKQD |
| 1K8K Chain:A ((3-399)) | -------------------GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKE--VMKGVDDLD--FFIGDEAIEK-----PTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRA-EPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKN-IVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1K8K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -131660 for 2598 contacts (-50.7/contact) +
2D Compatibility (PS) -34900 + (NN) -7595 + (LL) 1360
1D Compatibility (HY) -6000 + (ID) 2650
Total energy: -181445.0 ( -69.84 by residue)
QMean score : 0.460
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