Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQDIYDAKRVAEGTGFP-HYILNYEEIFKKEVIESFAQTY--IQGKTPIPCIKCNQTVKFRDLLQVTRNLGADVLITGHYVRRLEKNGEVKLCRGIDKSKDQSYFLFATTKEQLKLLRFPLGGF-------YKCNVRKLARYFSLPIS---EKPDSQDICFVSENY-SKTIAKLAPQSIQKGKIVDVNGKVLGEHNGIVNFTVGQRKGLGIA-YSEP-----LYVVRINTKNNEIVVGPVNALMQRKILVKELNWLEQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFSISPGQACVAYKDEQVIGGGWICS |
| 2NZ2 Chain:A ((5-258)) | -----------------KGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQK---------------EDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLA-RPCIARKQVEIAQREGAKYVSHGATGKGNDQ---VRFELSC----------YSLAP--QIKVIAPWRMPEFYNRFK-RNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENP--KNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQER |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NZ2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107828 for 1694 contacts (-63.7/contact) +
2D Compatibility (PS) -24806 + (NN) -7880 + (LL) 1936
1D Compatibility (HY) -3600 + (ID) 2000
Total energy: -144178.0 ( -85.11 by residue)
QMean score : 0.376
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