Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIITIFGPPGSGKGTQSSLLIERYNLKLISVGDLLRNIISSGSELGKKIKDTVESGNLIQDGVICELLYDQLALMD--DNFLFDGFPRNLNQAHFLTQILRERYNRDVDIVIELQLNDKVAIDRLKNRLVCLDCKSVYSTS------SFKDDNNLVCTRCKSARLEKRIDDSDLSAIDRRIGEYHVQVKSLREYYRD-------KLLMIDANLNVDQVKQEIESKISCSLV
4JZK Chain:B ((1-210))
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA-----GINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDD-------VTGEELTTRKDDQE-ETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG----
General information:
TITO was launched using:
RESULT:
Template:
4JZK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71289 for 1514 contacts (-47.1/contact) +
2D Compatibility (PS) -20954 + (NN) -5367 + (LL) 1376
1D Compatibility (HY) -13200 + (ID) 3600
Total energy: -113034.0 ( -74.66 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_4JZK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JZK-query.scw
PDB file :
Tito_Scwrl_4JZK.pdb
: