Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKDPVLNAVTFLMVPLIILFALYIQFHGDYTPGGGFQAGIIIASGIILYSMLFGVSTTLKAIPYSAIKFTSMLGIFIYGGTG--IATVLLGQNFLSYDILLANNVAGQKLGIFLVELGVALTVCSSMLIIYIDFARRKK-
1K40 Chain:A ((921-1046))
---NDKVYENVTGLVKAVIEMSSKIQ-----PAPPEEYVPMVKEVGLALRTLLATVDETIPALPASTHREIEMAQKLLNSDLGELISKMKLAQQY-------VMTSLQQEYKKQMLTAAHALAVDAKNLLDVIDQARLKML
General information:
TITO was launched using:
RESULT:
Template:
1K40.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115159 for 858 contacts (-134.2/contact) +
2D Compatibility (PS) -12595 + (NN) -4804 + (LL) 1216
1D Compatibility (HY) -1200 + (ID) 1350
Total energy: -133892.0 ( -156.05 by residue)
QMean score : 0.278
(partial model without unconserved sides chains):
PDB file :
Tito_1K40.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K40-query.scw
PDB file :
Tito_Scwrl_1K40.pdb
: