Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKLTENKKPLVDKEDKKTPPVKGFTKKNKSRRDFITLTTCAMASIGTVSGLWPLIKSMNPSAEVLAMSTVEVNLSGIQEGHGIKVKWQGKPVFIRRRTKQEIKAARVVNVEDLRDPQSDEQRVHKGKDEWLIMVGVCTHLGCVPVEHATKDGNGWFCPCHGSYYDTSGRVIGGPAPKNMVVPDYFFPNENVVVIGKKA
1PPJ Chain:R ((38-196))
-----------------------------------LVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVK--KPEWVILIGVCTHLGCVPIANA-GDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG---
General information:
TITO was launched using:
RESULT:
Template:
1PPJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44171 for 1088 contacts (-40.6/contact) +
2D Compatibility (PS) -16819 + (NN) -2848 + (LL) 1472
1D Compatibility (HY) -16000 + (ID) 3950
Total energy: -82316.0 ( -75.66 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_1PPJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PPJ-query.scw
PDB file :
Tito_Scwrl_1PPJ.pdb
: