Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFVRLLSSILVALSVIFLGYCYFTKKGIFAPAVIHNAEVKIGGDFSLINQDGQVIRSNDFKDKYMMIFFGFSSCKKICPMNLGIISETLAKLDEKTSDKLQTFFITVDPECDSTEKLKEFQQQFDYRIQMLTGERKKIDEVIANYKVYTSKVGGEEG-INHSSIIYLIGPGGKYVTHFAADLNSDESQSDKIAAEIKKYINEL
2B7K Chain:A ((16-184))
--------------------------------------GKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRV----------LVDHSIFFYLMDPEGQFVDALGRNY-DEKTGVDKIVEHVKSYVPA-
General information:
TITO was launched using:
RESULT:
Template:
2B7K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79370 for 1184 contacts (-67.0/contact) +
2D Compatibility (PS) -16653 + (NN) -7563 + (LL) 3976
1D Compatibility (HY) -14400 + (ID) 2500
Total energy: -116510.0 ( -98.40 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_2B7K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B7K-query.scw
PDB file :
Tito_Scwrl_2B7K.pdb
: