Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------MNLNEQPDVLTFLNSNLKGISKFHFGILSKLCGGNKVMDLLFYRPLSYVDRSKSLLDARVGELTTFIAKIYEHQPPTFRGRPYKIVVESKSQYIFIVFFNYSIKYLYKLFPIGANVIISGKLEKFAEHWQVTHPDYVLLDTNQFEEIARVEPVYQLCRGITNKSIRNIINSNLKELPDLPEWIGDTLIKQNKWLSWKESIIKLHRPNSLAEAEICRRRLAYDELFAYQMALKLARENHVRKRGREFTISNKYKEQVLNELSFQLTNDQIRAIDEISERQKSKCRMVSLLQGDVGSGKTVVALFAMLNVIENNMQAALMAPTTILAEQHYNWIEEALSYTDIKIALLTGKTTRKERKIITNELASGILKIIIGTH-ALFQANVTFKNLGLAVIDEQQRFGVIQ--------RNCLVGKGENAD--ILFVTATPIPRTLQQAIYGDVECSILREKPKSRLP-IKTVAMNIKKLVEVIEKLKSAINRGEKAYWI--------------------CPCIGGNEGLNIAAAEMRFQELQKTF-------------FNKVGI----IHGKLTQV-------QKDQVMFSFKRNEFPLLVATTVIEVGIDVPDATIMII-----------ENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYNNISKSSFSKLKIMCESQDGFYIAEKDMMLRGSGDILGLKQSGCMEFKFADLYKDRELLNLAYNNTKSAIAENKSFELLLDIFEYRSRLHFSKFQ------------------------------- |
| 4NL4 Chain:H ((18-747)) | SVAHVALPVPLPRTFDYLLPEGMAVKAGCRVRVPFGKQERIGIVAAVSERSE-LPLDELKPVAEALDDEPVFSTTVWRLLMWAAEYYHHP-------------------IGDVLFHALPVMLRQGKPASATPL---------WYWFATEQG----QVVDLNGLKRSRKQQQALAALRQ---------------------GKIWRHQVGELEFNEAALQALRGKGLAELACEATD--------WRSAYSVAGER------------------------LRLNTEQATAVGAIHSAADRF--SAWLLAGITGSGKTEVYLSVLENVLAQGRQALVMVPEIGLTPQTIARFRQRF---NAPVEVLHSGLNDSERLSAWLKAKNGEAAIVIGTRSSLFTP---FKDLGVIVIDEEHDSSYKQQEGWRYHARDLAVWRAHSEQIPIILGSATPALETLHNVRQGKYRQLTLSKPAQQHVLDLKGQPLQAGLSPALISRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDSYYTLHQAQHHLRCHHCDSQRPIPRQCPSCGSTHLVPVGIGTEQLEQALAPLFPEVPISRIDRHLAAVHRGGARILIGTQMLAKGHHFPDVTLVSLLDVDGALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVILQTHH---PEHPLLQTLLYK-GYDAFAEQALAERQTMQLPPWTSHVLIRAEDHNNQQAPLFLQQLRNLLQASPLADEKLWVLGPVPALRWQILLQHPSRVRLQHIVSGTLALINTLPEAWVLDVDPIEG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NL4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -245203 for 4270 contacts (-57.4/contact) +
2D Compatibility (PS) -60889 + (NN) 4316 + (LL) 7144
1D Compatibility (HY) -18000 + (ID) 5900
Total energy: -318532.0 ( -74.60 by residue)
QMean score : 0.270
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