Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIERTLSILKPDTVKNNIIGNINSYIEKSGLRIIAQKMMLLTKKQAELFYAIHKDRPFFGGLVEFMTSGPVIVQVLVGENAISKYRQIMGATDPKQADKGTIRGDFADDVNENRVHGSDSLENAHKEIAFFFAECELV
1NHK Chain:L ((1-137))
-AIERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIH
General information:
TITO was launched using:
RESULT:
Template:
1NHK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54349 for 1060 contacts (-51.3/contact) +
2D Compatibility (PS) -14677 + (NN) -2910 + (LL) 208
1D Compatibility (HY) -12800 + (ID) 4000
Total energy: -88528.0 ( -83.52 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_1NHK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NHK-query.scw
PDB file :
Tito_Scwrl_1NHK.pdb
: