Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MHKFAILFSILLAIVAYHLNNEVAFEVARLFSGIFISLLKLISLPLVFLSIVSTISGLKDSIEIKTLVKKTLFYTLLTTIIAAFVALSFYLLIDPVRKNFISNTIESASNSNYNYFSYLKLLIPSNFMQVFLKNNTIGSILIAFLMGRAIISLP-------KGKQDILHQVFSALFDTLLKIAQWLLKFIPLAVWSFITCFLHELKGGSEFYSLLWYFACIMSANSVQAFLILPLLMWCKGISPIQTLRGVMPALTLAFFSKSSSATLPTTIDCVQNKLKVPKKLSSFILPICTTINMNACATFILITVMFVAEMNGCTFSLSEIFIWIFLATGAAIGNAGVPMGCYFMATSYLVSMNVPL------YIMGLILPIYTIIDMFETAINVWSDVCVTQIINKEYKGEI |
| 4OYF Chain:A ((9-416)) | EYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPA-RLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNP------GAGIHLAVGGQL--VHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAE-QGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -465527 for 3378 contacts (-137.8/contact) +
2D Compatibility (PS) -39202 + (NN) -17692 + (LL) 1268
1D Compatibility (HY) -30800 + (ID) 4950
Total energy: -556903.0 ( -164.86 by residue)
QMean score : 0.409
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