Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNDNEKRVLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGGRKPILLKVNHLYGYFISLDLTYSSVEVMYNYFDGNVIKHESYDLPDEKVSSILSIIKK-HIDIQEKLDTYNGLLGVSVSIHGVVDNEQH-VTYLP-FHETEGISIAKKIKEITNVPVVVENEANLSALYERNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVSDNV-E-IFHKIEDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIHNLNTQFNPNAIYINCPLFNEM-PEILEAIKNQFKQYSR--NEIQIKLTSNVKFATLLGGTLAIIQKVLQINDIYLDIKA |
3VOV Chain:A ((2-300)) | -------------------------------------------------------------------------KVVGLDLGGTKIAAGVFDG-KRLLSKVVVPTPKEGGERVAEALAEAAERAERE--AGVRGEAIGLGTPGPLDFRRGVIR---NIPGVQDFPIRRILEEATGRPVFLENDANAAALAEHHLGAAQGEESSLYLTVSTGIGGGVVLGGRVLRGERGQGGELGHLTLLPGGPACGCGLEGCLEALAAGRALERDATYAFQRPVDTRELFRLFQAGDPKAERLVLQAARYVGIGLASLVKAFDPGVVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTAYLEVKDG--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VOV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -206795 for 2601 contacts (-79.5/contact) +
2D Compatibility (PS) -30686 + (NN) -11388 + (LL) 4872
1D Compatibility (HY) -8000 + (ID) 2400
Total energy: -254397.0 ( -97.81 by residue)
QMean score : 0.442
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