Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELIGDK--STVQQAIHALQLIGFENVKSYRLPQTN-IV---------TS-----------------SIHSSEMT--GEEHNVLDVRNDDEWR----------------KGHLKQAIHIPHGKLLNE-------------DIPFDKNDLIYVHCQSGVRSSIAVGILEY-KGFTNIVNVRGGYQHLPAFLK
3HZU Chain:A ((114-301))
VVIYGDKSNWWAAYALWVFTLFGHADV-RLLNGGRDLWLAERRETTLDVPTKTCTGYPVVQRNDAPIRAFRDDVLAILGAQPLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWGKAADESGRFRSREELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEWGNA--
General information:
TITO was launched using:
RESULT:
Template:
3HZU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60510 for 927 contacts (-65.3/contact) +
2D Compatibility (PS) -13410 + (NN) -2935 + (LL) 304
1D Compatibility (HY) -6000 + (ID) 1550
Total energy: -84101.0 ( -90.72 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_3HZU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HZU-query.scw
PDB file :
Tito_Scwrl_3HZU.pdb
: