Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRVSYSVETKYKAVEMKAAGFSTKEIMKELNIKNRTQVETWWRWYRNGESYRFSQHVGKQYTYGKGLEELSEVEQLK---LENKRKDIELDILKKYKALERKWYQQ-
2LVS Chain:A ((1-105))
---MPSVNDSLDIVEKLYKDGVPVKEIAKRSNNSMSTVYKALEKLEAMGRIKRRKGRYRQHRRLTEEELATIRELYLKGATVYEIARQLGRPESTIYYALKKLGLKLE
General information:
TITO was launched using:
RESULT:
Template:
2LVS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 19463 for 619 contacts (31.4/contact) +
2D Compatibility (PS) -10622 + (NN) -1912 + (LL) 372
1D Compatibility (HY) 1600 + (ID) 700
Total energy: 8201.0 ( 13.25 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_2LVS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVS-query.scw
PDB file :
Tito_Scwrl_2LVS.pdb
: