Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKQYGEKFIDEFSKAELEKLAKQGQLIDVRTEEEYALGHINGSILHPVDEI-E-SFNKEKNKTYYVICRSGNRSANASKYLAKQGYNVINLDGGYKAYEENDSYDTQEEYKSIEIKADRKQFNYRGFQCPGPIVKISQEMKNIEVGDQIEVKVTDPGFPSDIKSWVKQTRHTLVKLDENNNGINAIIQKEKAKDLDINYSAKGTTIVLFSGELDKAVAALIIANGARAAGKDVTIFFTFWGLNALKKVQTVNVKKQGIAKMFDLMLPQKNIRMPLSKMNMFGLGNMMMRYVMKKKNVDSLPTLINQAIEQNIKLIACTMSMDVMGIQKEELRDEVEYGGVGTYIGATENANHNLFI |
| 3GK5 Chain:A ((101-199)) | --------YRSINAADLYENIKAYTVLDVREPFELIFGSIANSINIPISELREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSWIEEGYPVVL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GK5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -19323 for 719 contacts (-26.9/contact) +
2D Compatibility (PS) -10753 + (NN) -4767 + (LL) 18516
1D Compatibility (HY) -7600 + (ID) 1600
Total energy: -25527.0 ( -35.50 by residue)
QMean score : 0.485
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