Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MRILNIV----SSNIVQDPRVLKQIETIKGVTNDYKIVGMNNSQATNRRLENLDCNYRLLGSKVDP-----KNILSKLIKRIRFATGVIREIKAFKPDVIHA-NDFDVLLMVYLSNYKKANIVYDAHEIYAKNAFINKVPLISKFVESIEKHIVKHRVNAFVTVSHAAKEYYQSKGYKKEANV-----ITNAPILNDSREFKEIENFKE----IVYQGQIVMDRGYEEFIIASSAFKQNAPS--FIIRGFGPHEEVIKELISYN--SENIRLDKPVEVKELVDKLAESNVGVILTKPVSINFEYTVSNKIFECIHAGLPVILSPVKEHIYLNEKYKFGIVLKEVTPLEIEKAVRKLRDNHDLFNHLRQNAIKASKILNWQIESERLVELYKF-------------- |
| 3C48 Chain:A ((19-438)) | SHMRVAMISMHTSPLQQGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAE-NLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKN--SYDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGTERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESF------GLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANENVDGETHHG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C48.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -137701 for 2974 contacts (-46.3/contact) +
2D Compatibility (PS) -38639 + (NN) -13986 + (LL) 884
1D Compatibility (HY) -4000 + (ID) 2550
Total energy: -195992.0 ( -65.90 by residue)
QMean score : 0.489
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