Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKVTDVRLRKIQTDGRMKALVSITLD-------EAFVIHDL-------------RVIEGNSGLFVAMPSKRTPDGEFRDIAHPINSDMRQEIQDAVMKVYDETDEVVPDKNATSEDSEEA-----
2HQ3 Chain:A ((35-160))
KAQIFLEGSPAPLFFSQVRDAIAYARGPEQIAPILVIYVNDMGAAGATWDQPGDGNWIAADKAFYVVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGGQVLALADITDAMVLTPVETGSEPRADDE
General information:
TITO was launched using:
RESULT:
Template:
2HQ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6367 for 697 contacts (-9.1/contact) +
2D Compatibility (PS) -10943 + (NN) -5919 + (LL) 0
1D Compatibility (HY) -1200 + (ID) 450
Total energy: -24879.0 ( -35.69 by residue)
QMean score : 0.255
(partial model without unconserved sides chains):
PDB file :
Tito_2HQ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HQ3-query.scw
PDB file :
Tito_Scwrl_2HQ3.pdb
: