Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVG-FDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS
4D9P Chain:A ((39-291))
--KTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGG---------VSVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVL--DLPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAM-----------
General information:
TITO was launched using:
RESULT:
Template:
4D9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126914 for 2115 contacts (-60.0/contact) +
2D Compatibility (PS) -27112 + (NN) -21443 + (LL) 1008
1D Compatibility (HY) -20400 + (ID) 5550
Total energy: -200411.0 ( -94.76 by residue)
QMean score : 0.706
(partial model without unconserved sides chains):
PDB file :
Tito_4D9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4D9P-query.scw
PDB file :
Tito_Scwrl_4D9P.pdb
: