Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
2KOK Chain:A ((6-119))
SVTIYGIKNCDTMKKARIWLEDHGIDYTFHDYKKEGLDAETLDRFLKTVP--WEQLLNRAGTTFRKLPEDVRS-NVDAASARELMLAQPSMVKRPVLERDGKLMVGFKPAQYEAYFK-
General information:
TITO was launched using:
RESULT:
Template:
2KOK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35582 for 727 contacts (-48.9/contact) +
2D Compatibility (PS) -12443 + (NN) -2768 + (LL) 560
1D Compatibility (HY) -7200 + (ID) 1450
Total energy: -58883.0 ( -80.99 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_2KOK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KOK-query.scw
PDB file :
Tito_Scwrl_2KOK.pdb
: