Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHLLETFEMSIDHQEDGLVVISMPVTDKVKQPFGYLHGGASIALGETACSLGSANLIDTTKFIPLGLEMNANHIHSAKDGRVTATAEIIHRGKSTHVWDIKIKNDKEQLITVMRGTVAIKPLK
4K4B Chain:E ((24-135))
-------LDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKV-VGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAI----
General information:
TITO was launched using:
RESULT:
Template:
4K4B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69536 for 832 contacts (-83.6/contact) +
2D Compatibility (PS) -11609 + (NN) 1869 + (LL) 836
1D Compatibility (HY) -6400 + (ID) 2150
Total energy: -86990.0 ( -104.56 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_4K4B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K4B-query.scw
PDB file :
Tito_Scwrl_4K4B.pdb
: