Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRIIKYLTILVISVVILTSCQSSSSQESTKSGEFRIVPTTVALTMTLDKLDLPIVGKPTSYKTL------PNRYKDVPEIGQPMEPNVEAVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRKAQAKELNDHLNSVKQKIENKAAK---QKKHPKVLILMGVPGSYLVATDKSYIGDLVKIAGGENVIKVK------DRQYISSNTENLLNINPDIILRLPHGMPEE---VKKMFQKEFKQNDIWKHFKAVKNNHVYD-LEEVPFGITANV-DADKAMTQLYDLFYKDKK |
3MWF Chain:A ((16-295)) | ---------------------------EIKGKPKRVVTLYQGATDVAVSLGVKPVGAVESWTQKPKFEYIKNDLKDTKIVGQEPAPNLEEISKLKPDLIVASKVRNEKVYDQLSKIA-PTVST--DTVFKFKDTTKLMGKALGKEKEAEDLLKKYDDKVAAFQKDAKAKYKDAWPLKASVVNFRADHTRIYAG-GYAGEILNDLGFKRNKDLQKQVDNGKDIIQLTSKESIPLMNADHIFVVKSDPNAKDAALVKKTESEWTSSKEWKNLDAVKNNQVSDDLDEITWNLAGGYKSSLKLIDDLYEKLNIEK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MWF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -87550 for 2160 contacts (-40.5/contact) +
2D Compatibility (PS) -28440 + (NN) -21494 + (LL) 3316
1D Compatibility (HY) -6400 + (ID) 2500
Total energy: -143068.0 ( -66.24 by residue)
QMean score : 0.479
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