Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLINKKNTINNYNEELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLSEE
3WYJ Chain:A ((20-240))
--------------------------HVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSS-----PAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE---------
General information:
TITO was launched using:
RESULT:
Template:
3WYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103486 for 1615 contacts (-64.1/contact) +
2D Compatibility (PS) -22990 + (NN) -8444 + (LL) 1860
1D Compatibility (HY) -16000 + (ID) 4450
Total energy: -153510.0 ( -95.05 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_3WYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WYJ-query.scw
PDB file :
Tito_Scwrl_3WYJ.pdb
: