Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKKI--PMRKCILSNEMHPKKDMIRVVVNKEGEIFADVTGKKQGRGAYVSKDVAMVEKAQQKEILEKYFKASKEQLDPVYKEIIRLIYREEIPK
2KFV Chain:A ((20-92))
MAAAVPQRAWTVEQLRSEQLPKKDIIKFLQEHGSDSFLAE-HKLLGNIKNVAKTA---NKDHLVTAYNHLFETKRFK-------------------
General information:
TITO was launched using:
RESULT:
Template:
2KFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11765 for 461 contacts (25.5/contact) +
2D Compatibility (PS) -7488 + (NN) -3883 + (LL) 2424
1D Compatibility (HY) -800 + (ID) 750
Total energy: 1268.0 ( 2.75 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_2KFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KFV-query.scw
PDB file :
Tito_Scwrl_2KFV.pdb
: