Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMT--DYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
3RPF Chain:A ((60-118))
----TWFEKWHHKAKDL-GVVLKMAHSLGDVLIGQSSFLCVSMGKNRKNALELYENFIEDFKHN-------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RPF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4658 for 318 contacts (-14.6/contact) +
2D Compatibility (PS) -6524 + (NN) -5948 + (LL) 4888
1D Compatibility (HY) 0 + (ID) 300
Total energy: -12542.0 ( -39.44 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_3RPF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RPF-query.scw
PDB file :
Tito_Scwrl_3RPF.pdb
: