Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEA--SVTNDTLN------NQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAY--GLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
3LMV Chain:B ((1-159))
MRVVIQRVKGAILSVRK----KELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD----
General information:
TITO was launched using:
RESULT:
Template:
3LMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59905 for 1022 contacts (-58.6/contact) +
2D Compatibility (PS) -15987 + (NN) -8459 + (LL) 288
1D Compatibility (HY) -14800 + (ID) 3050
Total energy: -101913.0 ( -99.72 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_3LMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LMV-query.scw
PDB file :
Tito_Scwrl_3LMV.pdb
: