Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKVIGLTGGIASGKSTVSELLSVFGFKVVDADKAAREAVKKGSKGLAQVREVFGDEAIDENGEMNRRYMGDLVFNHPEKRLELNAIIHPIVRDIMEEEKQEYLKQGYN-VIMDIPLLFENELENTVDEVWVVYTSESIQMDRLMQRNNLSLEDAKARVYSQISIDKKSRMADHVIDNLGDKLELKQNLERLLEEEGYIEKPNYGEED
2F6R Chain:A ((74-274))
GLYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERDGLSEAAAQSRLQSQMSGQQLVEQSNVVLSTLWESHVTQSQVEKAWNLLQKRLP-------
General information:
TITO was launched using:
RESULT:
Template:
2F6R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63062 for 1542 contacts (-40.9/contact) +
2D Compatibility (PS) -22364 + (NN) -10184 + (LL) -168
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -108428.0 ( -70.32 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_2F6R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F6R-query.scw
PDB file :
Tito_Scwrl_2F6R.pdb
: