Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGETVLKSPSIYEVIKEIGEFSEHHFYCAIFIPSTEDHAYQLEKKLISVDDNFRNFGGFKSYRLLRPAKG-TTYKIYFGFADRHAYEDFKQSDAFND-HFSKDALSHYFGSSGQHSSYFERYLYPIKE
1IUJ Chain:A ((1-102))
-----------------------------------------------------------------MFVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVLRPKNPGDPYVVMTLWESEEAFRAWTESPAFKEGHARSGTLPKEAFLGPNRLEAFEVVLDSE--
General information:
TITO was launched using:
RESULT:
Template:
1IUJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29956 for 631 contacts (-47.5/contact) +
2D Compatibility (PS) -11004 + (NN) -6147 + (LL) 4428
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -46529.0 ( -73.74 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_1IUJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IUJ-query.scw
PDB file :
Tito_Scwrl_1IUJ.pdb
: