Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MIRNR----------VMNSVVNKYLLHNRSIMFK---NDQDVERFFYKREIENRKKHKQPSTLNVKANLEKLSLDDMQVFRFNFRHQ----IDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEV-VLPI-YPKTPEFHIDDTFQAIQRVYDQLVSEVGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDIS-DALIEQDAVLSQFGVNEIMKKWANGLPLTDKRISPINGTIEGLPPVYMFGGGREMTHPDMKLFEQMMLQHHQYIEFYDYPKMVH-DFPI-YPIRQSHKAIKQIAKSIDEDVTQNN |
| 4Q05 Chain:A ((34-360)) | ENSWQIGPRTLPAPSGASDVLYNIISKTPTPVPTINLNLVPRTESEWRAAITQLDEGKVDMAREISKQLSVSVEHGVIEGVSVYYVTPVEVAPDLEDKLFVHTHGGAFVLNGG--EAGTIEAIVIATLAKVRVLSIDYRMPPSHPAPAARDDVFTVYQHLLKQGSAQKIALGGSSGGANLTMGLVQHLIEQEVDLPGALFLGTPGADMSKTGDSYYINDGIDRNLVTYDGFLEAAVRLYANGRDLKDPLVSPLYGDLHGFPPTFLITGTRDLLLSATVRTHIKLRQSGVVADLFVYEGIAHGDYAVDLTAPETQHAFAELNAFLLQHLR--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q05.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -146238 for 2678 contacts (-54.6/contact) +
2D Compatibility (PS) -31774 + (NN) -10453 + (LL) -48
1D Compatibility (HY) -11600 + (ID) 3000
Total energy: -203113.0 ( -75.85 by residue)
QMean score : 0.515
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