Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDGSNRKMQLELF---PIDL-------------PYASAKEIAIAKMQHLP---------------------------------------KLVRDALKYMGFDRVSQ-----EIVFEYEPKLL------KPSRLTYFYGYFQDPRYFDA---ISSLIKQTFTLPPPPENGNNKKKEEEYHRKLSLILAAKNS---VFAHIRRGDYV-GIGCQLGI------------------------------DYQKKAVEYMAKR--------VPNMELFVFCEDLKFTQNLDLGYPFMDMTTRDKDEEAYWDMLLMQSCKHGIIANSTYSWWAAYLINNPGKIIIGPKHWLFGHENILCKEWVKIESHFEVKSQKYNA-------------------------------- |
| 3HJH Chain:A ((5-450)) | YRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVES--EGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HJH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -60645 for 1690 contacts (-35.9/contact) +
2D Compatibility (PS) -32051 + (NN) -12329 + (LL) 332
1D Compatibility (HY) -5200 + (ID) 2300
Total energy: -112193.0 ( -66.39 by residue)
QMean score : 0.126
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