Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKPKKNTLPCSLSVKMS--YFMRLLIKWRTRSLSHKMMTLVQILSILALASKASEDLEEQLKKIKDYIYKTLNAKIASDVYDRVLILVNEYCANEELFDKESVKISDLLIQDIQL-YALVDEMLKEDKYQVQHTILK--GIIKRKYDEAYSLNSEDRILLEYQERLLEPSYASFSNKKFK
3OC8 Chain:A ((4-137))
MEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSKHGYTNLWDVQFKVLVGVPHAE----------------TGVIYDPVYEETVKPYQPS------NNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYS-------------------------ENFK
General information:
TITO was launched using:
RESULT:
Template:
3OC8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52194 for 864 contacts (-60.4/contact) +
2D Compatibility (PS) -12700 + (NN) 9078 + (LL) 3976
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: -55390.0 ( -64.11 by residue)
QMean score : 0.230
(partial model without unconserved sides chains):
PDB file :
Tito_3OC8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OC8-query.scw
PDB file :
Tito_Scwrl_3OC8.pdb
: