Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIIPARLKSSRFENKMLEDIFGLPMVVRCAKNA-NL-VDECVVACDDESIMKACQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVILALLEATQNA-PFM-ATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRDFD---AK-----RQTPLLGHIGIYGFHNKEILEELCA-LKPCVLEDTEKLEQLRALYYQKKILVKIVQ-SESMGIDTKEDLQNALKIFSPNLLKR
1VIC Chain:A ((4-256))
TVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRA-GFIKQYVQWAPTQLENLE-KLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAANGS--
General information:
TITO was launched using:
RESULT:
Template:
1VIC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148282 for 1868 contacts (-79.4/contact) +
2D Compatibility (PS) -25782 + (NN) -10843 + (LL) 332
1D Compatibility (HY) -12400 + (ID) 4100
Total energy: -201075.0 ( -107.64 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_1VIC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIC-query.scw
PDB file :
Tito_Scwrl_1VIC.pdb
: