Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVTFQVPSITCNHCVDKIEKFVGEIEGVSFIDASVEKKSVVVEFDTPATQD-LIKEALLDAGQEVV
1YJR Chain:A ((5-69))
-VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPS
General information:
TITO was launched using:
RESULT:
Template:
1YJR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51828 for 442 contacts (-117.3/contact) +
2D Compatibility (PS) -6950 + (NN) -3099 + (LL) 208
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -66319.0 ( -150.04 by residue)
QMean score : 0.778
(partial model without unconserved sides chains):
PDB file :
Tito_1YJR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YJR-query.scw
PDB file :
Tito_Scwrl_1YJR.pdb
: