Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGVFDSGVGGFSVLKSLLKARLFDEIIYY-GDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQ-QGYLNISHLATSLFVPLIEE------SILEGELLETCMHYYFTPLEILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAIVEYLQQKYALKNNACTF---PKVEFHASGDVIWLERQAKEWLKL
2JFQ Chain:B ((25-275))
--IGVIDSGVGGLTVAKEIMR-QLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVIEPG--ARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSE----SDTVILGCTHYPLLYKPIYDYFGGK------KTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDTTHITNIIKEWLNL
General information:
TITO was launched using:
RESULT:
Template:
2JFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -207981 for 2170 contacts (-95.8/contact) +
2D Compatibility (PS) -25923 + (NN) -10129 + (LL) 1680
1D Compatibility (HY) -18800 + (ID) 4550
Total energy: -265703.0 ( -122.44 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_2JFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFQ-query.scw
PDB file :
Tito_Scwrl_2JFQ.pdb
: