Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELGNKNIKPGRKRVAVDELKRNFSVTFYLSKEEHDVLRRLADEEVESVNSFVKRHILKTIIYKKGTNQDSSINCDSSSRL
2CPG Chain:A ((1-43))
-------------------MKKRLTIT--LSESVLENLEKMAREMGLSKSAMISVALEN---YKKGQ--------------
General information:
TITO was launched using:
RESULT:
Template:
2CPG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4485 for 199 contacts (-22.5/contact) +
2D Compatibility (PS) -4668 + (NN) -1920 + (LL) 1884
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -12189.0 ( -61.25 by residue)
QMean score : 0.267
(partial model without unconserved sides chains):
PDB file :
Tito_2CPG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CPG-query.scw
PDB file :
Tito_Scwrl_2CPG.pdb
: