Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------------------------------------MDLEQAFLKIIEKKHKELNLGQDYNAIFSKIRDFEANAIGQIGEEFLKSVLNAIDEVINDGIIHDEYDIMTKSGVSF---EVKTAQKGRTNNTFQFNGINPRYNYDFLICLGVCEDQ---LLYRIFKKDEIHYIHKERKYFMKQNEFKKQLVPMN------PDNQVNDKLTLNLKELKEITNLIKEL--------ERILELD |
| 1LVA Chain:A ((1-258)) | GSPEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYAISTERYQAWWQAVTRALEEFHSRYPLRPGLA-----REELRSRYFSRLPARVYQALLEEWSR---EGRLQLAANTVALAGFTPSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYWHRQALGEAREVIKNLASTGPFGLAEARDALGSSRKYVLPLLEYLDQVKFTRRVGDKRVVVGN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LVA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -31483 for 1168 contacts (-27.0/contact) +
2D Compatibility (PS) -18786 + (NN) -9360 + (LL) 832
1D Compatibility (HY) -6000 + (ID) 900
Total energy: -65697.0 ( -56.25 by residue)
QMean score : 0.340
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