Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKFAYSEPCL-DEEDKKAVLEVLNSKQLTQGKYSLLFEEALCEFLGVKHALAFNSATSA-LLTL-YRNFSDFNADRNEIITTPI-SFVATAN-MLLESGYTPVF-AEVKNDGN-IDELALEKLITKKTKAIVSVDYAGKSVEIESIQRLCKKYSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNNSELYEKMKLFRSHGMLKKDFFEGEVKSVGYNFRLNEIQSALGLSQLKKAPLLRQKREEVALIYDEIF-KDNPYFTPLHPLLKHQSSNHLYPILMHQKFFTCKKLIL-ESLHKLGILVQVHYKPIYQYQLYQQLFNTAPLKSAEDFYSAEISLPCHAN-LDLESVQNIAHGVLKTFEGFNRMGFI |
| 1MDO Chain:A ((9-384)) | -DFLPFSRP-AMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGE-----GDEVITPSMTWVSTLNMIVL-LGANPV-MVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARG-TAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDQA---EVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQ-AMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMT--ESDFDRVITALHQIAG------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -150832 for 3031 contacts (-49.8/contact) +
2D Compatibility (PS) -39178 + (NN) -26235 + (LL) 1788
1D Compatibility (HY) -14400 + (ID) 5450
Total energy: -234307.0 ( -77.30 by residue)
QMean score : 0.468
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