Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------MIFLKKSLCALLISGF--FIPPLMKAASFVYDLKFMSFNFNLASPPNNPYWNSLTKM------QGRLMPQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKNYDFDQFLYFVSSE--------FQFLKGYLGLGGQLV---IFHNANSHSMGDNYPYGGNSYLKPGDATPQWPNGYPYFSQ---KDNPQGGEIGKYSNP--------TILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPNFDMIGLYYLYKNKWLSVRADAFFSFVGGGDGYHLYGKGGKWFVMYQQFLTLTIDTRELIDFVKSKIPK---- |
| 3C1M Chain:A ((2-470)) | TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRD-LGEKSIALEGGEAGIIT-DNNFGSARVKRLEVKERLLPLLKEGI-----IPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE-------TNISLVVSEEDVDKALKALKREFGDSFLNNN----------LIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSS-----EVNISFVIDEKDLLNCVRKLHEKFIEK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -124779 for 3268 contacts (-38.2/contact) +
2D Compatibility (PS) -42164 + (NN) 905 + (LL) 2468
1D Compatibility (HY) -9200 + (ID) 2400
Total energy: -175170.0 ( -53.60 by residue)
QMean score : 0.142
|
|
|