Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGYASKLALKICLVGLCLFSTLGAEHLEQKGNYIYKGEEAYNNKEYERAASFYKSAIKNGESLAYILLGIMYENGRGVPKDYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECFRKAMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAVVYYKMAADVSSSRAYEGLSESYRYGLGVEKDKKKAEEYMQKACDFDIDKNCKKKNTSSR
1OUV Chain:A ((33-250))
---------------------------------VGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG---RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY
General information:
TITO was launched using:
RESULT:
Template:
1OUV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67331 for 1922 contacts (-35.0/contact) +
2D Compatibility (PS) -24091 + (NN) -15246 + (LL) 2452
1D Compatibility (HY) -10800 + (ID) 3200
Total energy: -118216.0 ( -61.51 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_1OUV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OUV-query.scw
PDB file :
Tito_Scwrl_1OUV.pdb
: