Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTNGLFKMWGLFLVLIALVFNACSDSHKEKKDALEVIKQRGVLKVGVFSDKPPFGSVDSKGNYQGYDVVIAKRMALDLLGDE---NKIEFIPVEASARVEFLKANKVDIIMANFTRTKEREKVVDFANPYMKVALGVIS-KDGVIKNIEELKDKELIVNKGTTADFYFTKNYPNIKLLKFEQNTETFLALLNNKAIALAHDNTLLLAWVKQHPEFKLGITSLGDKDVIAPAIKKGNPKLLEWLNNEIDSLISSDFLKEAYQETLEPIYGDGIKPEEIIFE
1XT8 Chain:A ((34-275))
-------------------------------LNSLDKIKQNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKEL---FGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIE
General information:
TITO was launched using:
RESULT:
Template:
1XT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118484 for 2013 contacts (-58.9/contact) +
2D Compatibility (PS) -26273 + (NN) -15905 + (LL) 2528
1D Compatibility (HY) -23200 + (ID) 7200
Total energy: -188534.0 ( -93.66 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_1XT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XT8-query.scw
PDB file :
Tito_Scwrl_1XT8.pdb
: