Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIDRKLLLQ----DFDKVALSLKKRNHAMDDELERLREAIAHYKKQLIELEGLQAFQNKVSKEFGIKMAQKMDT------------------------SDLKKELENNKIKLNELSKSVGEAEQEMDLKLSIIPNLVDEKTPLGASE-EDNIEIKKILTPRNFTFKPKEHFELAQQNGWIDFESGVKLAKSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLYNDTIISVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPK--ESDAMQEHMLESASEILKALELPHRFVQLCSGDLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKEN-QKNQLVHTLNGSSLAVGRTMVALMENHQQADGSIHIPKALEKYL |
| 3VBB Chain:A ((2-460)) | VLDLDLFRVDKGGDPALIRETQEKRFKD-PGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKE--DESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTV--RKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLS-FDEELYKVI-DEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGS----TRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTMDKVEFVHMLNATMCATTRTICAILENYQTEKG-ITVPEKLKEFM |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VBB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107065 for 3190 contacts (-33.6/contact) +
2D Compatibility (PS) -43334 + (NN) -22526 + (LL) 284
1D Compatibility (HY) -25200 + (ID) 6300
Total energy: -204141.0 ( -63.99 by residue)
QMean score : 0.500
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