Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLVTRFKKAFISYSLGVLVVSLLLNVCNASAQEVKVKDYFGEQTIKLPVSKIAYIG-SYVEVPAMLNVWDRVVGVSDYAFKDDIVKATLKGEDLKRVKHMSTDHTAALNVELLKKLSPDLVVTFVGN-P-KAVEHAKKFGISFLSFQ-ETTIAEAMQAMQAQATVLEID--ASKKFAKMQETLDFIAERLKGVKKKKGVELFH--KA--NKISGHQAISSDILEKGGIDNFGLKYVKFGRADISVEKIVKENPEIIFIWWVSPL---TPEDVLNNPKFSTIKAIKNKQVYKLPTM--DIGGPRAPLISLFIALKAHPEAFKGVDINAIVKDYYKVVFDLNDAEIEPFLWH |
| 3MD9 Chain:A ((2-254)) | ------------------------------------------------AERIVTIGGDVTEIAYALGAGDEIVARDSTSQQPQA---------AQKLPDVGY--MRTLNAEGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVPGQTTPESVAMKINAVATALHQTEKGQKLIEDYQQRLAAVNKTP----LPVKVLFVMSHGGLTPMAAGQNTAADAMIRAAGGSNAMQG--FSRYRPLSQEGVIASAPDLLLITTDGVKALGSSENIWKLPGMALTPAGKHKRLLVVDDMALLGFGLETPQVLAQLREKMEQM-------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MD9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -108514 for 1981 contacts (-54.8/contact) +
2D Compatibility (PS) -25545 + (NN) -11564 + (LL) 7916
1D Compatibility (HY) -2800 + (ID) 1950
Total energy: -142457.0 ( -71.91 by residue)
QMean score : 0.513
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