Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------------MIDELKKYKKIIEDAVDLLGYT---------PLRYAIFE-GEKNNRIEYQVRIEYIENHYEVY--TTGERASISGKKQFENFFEAYHNFLFKLQLSILQNRRRVRDGEPPEYFCALWEK
2GMF Chain:A ((4-124))
RSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVISEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITFESFKENLKDFLLVIPFD-----------------C--WEP
General information:
TITO was launched using:
RESULT:
Template:
2GMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23525 for 528 contacts (-44.6/contact) +
2D Compatibility (PS) -8915 + (NN) 1706 + (LL) 1236
1D Compatibility (HY) -5200 + (ID) 800
Total energy: -35498.0 ( -67.23 by residue)
QMean score : 0.190
(partial model without unconserved sides chains):
PDB file :
Tito_2GMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GMF-query.scw
PDB file :
Tito_Scwrl_2GMF.pdb
: