Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLDLWKWEMLLQGREFRNKTNDNWQKLMDWSDFISTGLSAIYVYVNKADATLNNKIDTVDKAVNARVNELISGTEQLSEVVDARSDAFGARYPVLRERLNQEQLNFSKKSTIQFDASTIISMEKQDIGLLTSKKISEAQTVCFLNISSLDEEADIVLEKTGETSFSDNLTSLVFAKIGTNERYQMEPVGA
2ABO Chain:A ((6-136))
------------SGT--------------YWATLITAFLKTV---------SKVEELDCVDSAVLVDVSKIITLTQEFRRHYD----------SVYRADYGPALKNWKR------DLSKLFTSLFVDV-------INSGRIVGFFDVGRYVCEE--VLCPGSWTEDHELLNDCMTHFFIENNLMNHFPLED
General information:
TITO was launched using:
RESULT:
Template:
2ABO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19824 for 992 contacts (-20.0/contact) +
2D Compatibility (PS) -12903 + (NN) 726 + (LL) 4796
1D Compatibility (HY) -10400 + (ID) 1450
Total energy: -39055.0 ( -39.37 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_2ABO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ABO-query.scw
PDB file :
Tito_Scwrl_2ABO.pdb
: